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Includes research world-wide, some of which is funded by U.S. Department of Energy. List provided by the Virtual Library on Genetics.

Archaea - Bacteria - Fungi - General Microbial and Microbial Communities - Nematode and Worm - Parasite - Protozoa - Virus - Yeast

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Actinobacillus
Agrobacterium
Alkalilimnicola
Alkaliphillus
Anabaena
Anaeromyxobacter
Bacillus anthracis (Anthrax)
Aquifex
Archaeoglobus
Arthrobacter
Azotobacter
Bacillus
Bacteria (General)
Bacteroides
Bdellovibrio
Bifidobacterium
Bordetella
Borrelia
Bradyrhizobium
Brevibacillus
Brucella
Buchnera
Burkholderia
Caldicellulosiruptor
Campylobacter
Candidatus
Caulobacter
Chlamydia
Chlamydophila
Chlorobium
Chloroflexus
Chromobacterium
Chromohalobacter
Clostridium
Corynebacterium
Coxiella
Crocosphaera
Cyanobacteria
Cytophaga
Dechloromonas
Dehalococcoides
Deinococcus
Desulfitobacterium
Desulfovibrio
Desulfuromonas
Ehrlichia
Enterococcus
Escherichia coli
Exiguobacterium
Francisella
Frankia
Fusobacterium
Geobacter
Haemophilus
Helicobacter
Ignicoccus
Jannaschia
Kineococcus
Klebsiella
Lactobacillus
Lactococcus
Legionella
Leptosphaeria
Leuconostoc
Magnetococcus (Magnetococcus)
Magnetospirillum
Marinobacter
Mesoplasma
Mesorhizobium
Methanococcoides
Methanospirillum
Methylobacillus
Methylobium
Methylococcus
Moorella
Mycobacterium
Mycoplasma
Neisseria
Nitrobacter
Nitrosococcus
Nitrosomonas
Nitrosospira
Nocardioides
Nostoc
Novosphingobium
Oceanobacillus
Oenococcus
Parachlamydia
Paracoccus
Pasteurella
Pediococcus
Pelobacter
Pelodictyon
Photorhabdus
Pirellula
Polaromonas
Porphyromonas
Prochlorococcus
Prosthecochloris
Pseudoalteromonas
Pseudomonas
Psychrobacter
Ralstonia
Rhizobium
Rhodobacter
Rhodoferax
Rhodopseudomonas
Rhodospirillum
Rickettsia
Rubrobacter
Saccharophagus
Salmonella
Shewanella
Shigella
Silicibacter
Sinorhizobium
Solibacter
Sphingopyxis
Staphylococcus
Streptococcus
Streptomyces
Synechococcus
Synechocystis
Syntrophobacter
Syntrophomonas
Thermoanaerobacter
Thermobifida
Thermosynechococcus
Thermotoga
Thermus
Thiobacillus
Thiomicrospira
Treponema
Trichodesmium
Tropheryma
Ureaplasma
Vibrio
Wolinella
Xanthomonas
Xylella
Yersinia

Bacteria

Actinobacillus

Agrobacterium

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI
Summary of A. tumefaciens, Strain C58, version 6.5: genome and metabolic pathways predicted by PathoLogic

Alkalilimnicola ehrlichei MLHE-1 from JGI Microbial Genomics

Alkaliphillus metalliredigenes from JGI Microbial Genomics

Bacillus anthracis

Aquifex

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Archaeoglobus

Archaeoglobus fulgidus TIGR Database: The Institute for Genomic Research
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Arthrobacter sp. FB24 from JGI Microbial Genomics

Bacillus

Bacillus cereus NVH391-98 from JGI Microbial Genomics
Bacillus stearothermophilus Strain 10 Genome Sequencing
BioCyc: collection of Pathway/Genome Databases
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI
NRSub, a non-redundant database of Bacillus subtilis France
SubtiList: Bacillus subtilis
University of Oklahoma Advanced Center for Genome Technology

Vibrio harveyi (bioluminescent salt water bacterium): Washington University Sequencing Center
ABIM Organism Databases: links to many different databases
Ancient bacteria at hydrothermal vent sites
Bacteria: from NCBI Taxonomy Browser
Common Access to Biological Resources and Information (CABRI)
Comprehensive Microbial Resource: from TIGR
Entrez Genome: NCBI: Squenced and unfinished genomes, including viruses, bacteria, archaea, and eukaryotes.
GeneDB: multiorganism database housing fungi, protozoa, bacterial and vector genomes
GOLD[TM] Genomes OnLine Database: monitors genome sequencing projects
Institute for Genomic Research (TIGR) is now J. Craig Venter Institute
Life at High Temperatures: Thermophilic Microorganisms
Micado: MICrobial Advanced Database Organisation: (formerly MadBase)
Microbes.info: Microbiology Microbes Bacteria Information and Links
MicrobesOnline: facilitates multi-species comparison
NIH Genome Sequencing Proposals (2005)
Organelle Evolution and Genomics
Quick Guide to Sequenced Genomes: Sequenced genome projects from the Genome News Network.
The Gene Index: Plants, animals, fungi, protist
The SEED: an Annotation/Analysis Tool
tmRNA Website: bacterial tmRNA

Bacteroides

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Bordetella

Borrelia

Borrelia burgdorferi: BNL Genome Sequencing Group
Borrelia burgdorferi TIGR Database: The Institute for Genomic Research
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Brevibacillus

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Buchnera

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Burkholderia

Caldicellulosiruptor saccharolyticus DSM 8903 from JGI Microbial Genomics

Campylobacter

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Caulobacter

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI
Summary of Cb. crescentus, Strain CB15, version 6.5: genome and metabolic pathways predicted by PathoLogic

Chlamydia

Chlamydia pneumoniae Genome Database: from TIGR
Chlamydia trachomatis Genome Database: from TIGR
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Chlorobium

Chloroflexus

Chloroflexus aurantiacus J-10-fl from JGI Microbial Genomics

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Chromohalobacter salexigens DSM from JGI Microbial Genomics

Clostridium

Corynebacterium

Corynebacterium diphtheriae Sequencing Project
Corynebacterium efficiens YS-314: DOGAN, a genome database of microorganisms sequenced at NITE
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Crocosphaera watsonii WH 8501 from JGI Microbial Genomics

Cytophaga

Cytophaga hutchinsonii ATCC 33406 from JGI Microbial Genomics

Dehalococcoides

Comprehensive Microbial Resource: from TIGR

Deinococcus

Desulfitobacterium

Desulfovibrio

Desulfuromonas acetoxidans DSM 684 from JGI Microbial Genomics

Enterococcus

Escherichia coli

Escherichia coli: from NCBI Taxonomy Browser
Escherichia coli (E. coli) Genetic Stock Center
Escherichia coli Genome Project: University of Wisconsin
coliBASE, an online database for E. coli, Salmonella and Shigella
Comprehensive Microbial Resource: from TIGR
EcoCyc: Encyclopedia of Escherichia coli Genes and Metabolism
Microbial Genomes from NCBI
Summary of E. coli O157:H7, Strain EDL933, serotype O157:H7, version 8.0: genome and metabolic pathways predicted by PathoLogic
University of Wisconsin Laboratory of Genetics
WWW Virtual Library: E. coli Index

Exiguobacterium sp. 255-15 from JGI Microbial Genomics

Francisella

Comprehensive Microbial Resource: from TIGR

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Geobacter

Geobacter metallireducens GS-15 from JGI Microbial Genomics
Comprehensive Microbial Resource: from TIGR
Geobacter Project: University of Massachusetts, Amherst
Microbial Genomes from NCBI

Haemophilus

Haemophilus influenzae TIGR Database: The Institute for Genomic Research
Haemophilus somnus 129PT from JGI Microbial Genomics
BioCyc: collection of Pathway/Genome Databases
Comprehensive Microbial Resource: from TIGR
GeneQuiz: Automated analysis of genomes: Synechocystis sp., Saccharomyces cerevisiae, Methanococcus jannaschii, Haemophilus influenzae, Mycoplasma genitalium
Microbial Genomes from NCBI

Helicobacter

Helicobacter pylori TIGR database: The Institute for Genomic Research
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI
Nature article "First set of bacterial proteins mapped"
Summary of Hb. pylori, Strain 26695, version 6.5: genome and metabolic pathways predicted by PathoLogic

Ignicoccus sp. Kin4-I from JGI Microbial Genomics

Jannaschia sp. CCS1 from JGI Microbial Genomics

Kineococcus radiotolerans SRS30216 from JGI Microbial Genomics

Klebsiella

Comprehensive Microbial Resource: from TIGR

Lactobacillus

Lactococcus

Legionella

Legionella pneumophila
Comprehensive Microbial Resource: from TIGR

Leptosphaeria

Leptosphaeria maculans - Sequencing of a genomic region involved in host specificity : Genoscope
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Leuconostoc mesenteroides ATCC 8293 from JGI Microbial Genomics

Magnetococcus

Magnetospirillum

Marinobacter aqueolei from JGI Microbial Genomics

Broad Institute: fulfulling the promise of genetics for medicine
Comprehensive Microbial Resource: from TIGR

Methanococcoides burtonii DSM 6242 from JGI Microbial Genomics

Methylobacillus flagellatus KT from JGI Microbial Genomics

Methylobium petroleophilum PM1 from JGI Microbial Genomics

Methylococcus

Comprehensive Microbial Resource: from TIGR

Mycobacterium

Mycobacterium bovis Sequencing Project
Mycobacterium leprae Sequencing Project
Mycobacterium tuberculosis
Mycobacterium tuberculosis Genome Database: from TIGR
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI
Summary of Mb. tuberculosis CDC1551, Strain CDC1551, version 6.5: genome and metabolic pathways predicted by PathoLogic
Summary of Mb. tuberculosis H37Rv, Strain H37Rv, version 6.5: genome and metabolic pathways predicted by PathoLogic

Mycoplasma

Mycoplasma genitalium TIGR database: The Institute for Genomic Research
Mycoplasma pneumoniae
Mycoplasma pulmonis - Complete genome sequencing : Genoscope
BioCyc: collection of Pathway/Genome Databases
Broad Institute: fulfulling the promise of genetics for medicine
Comprehensive Microbial Resource: from TIGR
GeneQuiz: Automated analysis of genomes: Synechocystis sp., Saccharomyces cerevisiae, Methanococcus jannaschii, Haemophilus influenzae, Mycoplasma genitalium
Microbial Genomes from NCBI

Neisseria

Neisseria gonorrhoeae Genome Sequencing: University of Oklahoma
Neisseria meningitidis Genome Database: from TIGR
Neisseria meningitidis Sequencing Project
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Nitrosomonas

Nostoc

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Oenococcus oeni PSU-1 from JGI Microbial Genomics

Microbial Genomes from NCBI

Paracoccus denitrificans PD1222 from JGI Microbial Genomics

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Pediococcus pentosaceus ATCC 25745 from JGI Microbial Genomics

Microbial Genomes from NCBI

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Polaromonas sp. JS666 from JGI Microbial Genomics

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Prochlorococcus

Pseudomonas

Ralstonia

Rhizobium

Rhizobium etli genome
Comprehensive Microbial Resource: from TIGR

Rhodobacter

Rhodobacter sphaeroides 2.4.1 from JGI Microbial Genomics
Rhodobacter sphaeroides ATCC 17025 from JGI Microbial Genomics
Rhodobacter sphaeroides ATCC 17029 from JGI Microbial Genomics
Rhodobacter Research: F. Robert Tabita Laboratory
BACTER Institute: Bringing Advanced Computational Techniques to Environmental Research (BACTER)
Comprehensive Microbial Resource: from TIGR

Rhodopseudomonas

Rickettsia

Rickettsia conorii - Complete genome sequencing : Genoscope
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Rubrobacter xylanophilus DSM 9941 from JGI Microbial Genomics

Salmonella

Salmonella enterica serovar Paratyphi B: Washington University Sequencing Center
Salmonella typhi: University of Wisconsin Genome Project Bacterial Pathogens Genome Initiative
Salmonella typhi Sequencing Project
coliBASE, an online database for E. coli, Salmonella and Shigella
Comprehensive Microbial Resource: from TIGR
Latest Salmonella News
Microbial Genomes from NCBI

Shewanella

Shewanella amazonensis SB2B from JGI Microbial Genomics
Shewanella baltica OS155 from JGI Microbial Genomics
Shewanella denitrificans OS217 from JGI Microbial Genomics
Shewanella frigidimarina NCIMB 400 from JGI Microbial Genomics
Shewanella putrefaciens CN-32 from JGI Microbial Genomics
Shewanella sp. ANA-3 from JGI Microbial Genomics
Shewanella sp. MR-4 from JGI Microbial Genomics
Shewanella sp. MR-7 from JGI Microbial Genomics
Shewanella sp. PV-4 from JGI Microbial Genomics
Shewanella sp. W3-18-1 from JGI Microbial Genomics
BACTER Institute: Bringing Advanced Computational Techniques to Environmental Research (BACTER)
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI
Shewanella Federation: Consortium formed to characterize and model the biology of Shewanella oneidensis MR-1

Shigella

Shigella flexneri: University of Wisconsin Genome Project Bacterial Pathogens Genome Initiative
coliBASE, an online database for E. coli, Salmonella and Shigella
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI
Summary of S. flexneri, Strain 2457T, Serotype 2a, version 8.0: genome and metabolic pathways predicted by PathoLogic

Sinorhizobium

Sinorhizobium meliloti
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Solibacter usitatus Ellin6076 from JGI Microbial Genomics

Sphingopyxis alaskensis RB2256 from JGI Microbial Genomics

Staphylococcus

Staphylococcus aureus MW2: DOGAN, a genome database of microorganisms sequenced at NITE
Staphylococcus aureus N315: DOGAN, a genome database of microorganisms sequenced at NITE
Staphylococcus aureus NCTC 8325 Genome Sequencing
Staphylococcus aureus Sequencing Project
Biodata System; DNA sequence data, University of Minnesota: Includes: Arachis hypogaea, Balsamifera subsp. trichocarpa, Eucalyptus, Euphorbia esula, Ictalurus punctatus, Picea glauca, Pinus taeda, Robinia pseudoacacia, Theobroma cacao, Triticum aestivum, and others
Comprehensive Microbial Resource: from TIGR
DOGAN (Database Of Genomes Analyzed in NITE)
Microbial Genomes from NCBI
University of Oklahoma Advanced Center for Genome Technology

Streptococcus

Streptomyces

Synechococcus

Synechococcus sp. CC9605 from JGI Microbial Genomics
Synechococcus sp. CC9902 from JGI Microbial Genomics
Synechococcus sp. PCC 7942
from JGI Microbial Genomics
Synechococcus sp. WH8102 from JGI Microbial Genomics
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI
SNL/ORNL Genomes to Life Project: Carbon Sequestration in Synechococcus sp. From Molecular Machines to Hierarchical Modeling
Synechococcus sp. WH8102 Knowledgebase

Synechocystis

Comprehensive Microbial Resource: from TIGR
CyanoBase Synechocystis sp. PCC 6803
GeneQuiz: Automated analysis of genomes: Synechocystis sp., Saccharomyces cerevisiae, Methanococcus jannaschii, Haemophilus influenzae, Mycoplasma genitalium
Microbial Genomes from NCBI
Synechocystis sp. PCC 6803

Syntrophobacter fumaroxidans MPOB from JGI Microbial Genomics

Syntrophomonas wolfei Goettingen from JGI Microbial Genomics

Thermobifida

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Thermotoga

Thermotoga maritima Genome Database: from TIGR
Biologically Derived Hydrogen--Future Fuel?: article from The Scientist, Apr. 21, 2003
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Thiobacillus

Treponema

Treponema pallidum Genome Database: from TIGR
BioCyc: collection of Pathway/Genome Databases
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Trichodesmium erythraeum IMS101 from JGI Microbial Genomics

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Vibrio

Vibrio cholerae Genome Database: from TIGR
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI
Summary of V. cholerae, Strain N16961, version 6.5: genome and metabolic pathways predicted by PathoLogic

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Xanthomonas

Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Xylella

Yersinia

Yersinia enterocolitica Sequencing Project
Yersinia pestis: University of Wisconsin Genome Project Bacterial Pathogens Genome Initiative
Yersinia pestis Sequencing Project
Comprehensive Microbial Resource: from TIGR
Microbial Genomes from NCBI

Updated 08-Jul-08

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Last modified: Thursday, September 27, 2007

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